Scripts

• cr_get_analytical_solutions module
  • handle_cmd_options()
  • load_configs()
  • load_grid()
  • main()
  • save_potentials()
  • save_voltages()
• cr_get_modelling_errors module
  • Output files
  • Usage example
  • compute_K_factors()
  • get_R_mod()
  • handle_cmd_options()
  • main()
  • plot_and_save_deviations()
• cr_trig_create module
  • Examples:
  • Mesh
    • Mesh.add_boundary()
    • Mesh.add_line()
    • Mesh.get_point_id()
    • Mesh.is_in()
    • Mesh.read_char_lengths()
    • Mesh.read_electrodes()
    • Mesh.read_extra_lines()
    • Mesh.read_extra_nodes()
    • Mesh.write_boundaries()
    • Mesh.write_electrodes()
    • Mesh.write_extra_nodes()
    • Mesh.write_geo_file()
    • Mesh.write_in_plane_nodes()
    • Mesh.write_lines()
    • Mesh.write_points()
  • _check_boundary_type_ordering()
  • _check_for_duplicate_boundary_nodes()
  • add_stabilizer_nodes()
  • check_boundaries()
  • handle_cmd_options()
  • main()
• cr_trig_parse_gmsh module
  • _line
    • _line.get_center()
    • _line.get_diff()
    • _line.get_distance()
  • debug_plot_mesh()
  • get_adj_bound_v1()
  • get_adj_bound_v2()
  • get_elements()
  • get_header()
  • get_nodes()
  • main()
  • parse_gmsh()
  • write_elec_file()
• grid_convert_boundary_to_svg module
  • main()
• grid_extralines_gen_decouplings module
  • check_options()
  • debug_plot()
  • distances()
  • get_decouplings_for_line()
  • handle_cmd_options_v2()
  • line_line_intersect()
  • main()
• grid_gen_decouplings module
  • Usage
  • main()
• grid_gen_depth_decoupling module
  • find_neighbors()
  • get_func_decoupling_at_z()
  • get_linear_fit()
  • get_univariate_spline()
  • handle_cmd_options()
  • load_decfile()
  • main()
• grid_gen_surface_files module
  • handle_cmd_options()
  • main()
• grid_homogenize module
  • grid_container
    • grid_container.save_to_dir()
  • handle_cmd_options()
  • homogenize_grid()
  • main()
  • rotate_point()
• grid_parse_svg_to_files module
  • Further information
  • Output files
  • handle_cmd_args()
  • main()
  • parse_svg_path()
• grid_plot_elem_angles module
  • main()
• grid_plot_wireframe module
  • handle_cmd_options()
  • main()
  • plot_wireframe()
• grid_rotate module
  • handle_cmd_options()
  • main()
  • rotate_nodes()
  • rotmat()
• grid_translate module
  • handle_cmd_options()
  • main()
  • translate_nodes()
• grid_translate_model module
  • _almost_equal()
  • _load_grid()
  • handle_cmd_options()
  • main()
• sd_plot module
  • calc_complex()
  • check_minmax()
  • handle_options()
  • main()
  • overview_plot
    • overview_plot.cm()
    • overview_plot.create_figure()
    • overview_plot.getfigsize()
    • overview_plot.load_grid()
    • overview_plot.save()
  • plot_cmplx()
  • plot_dc()
  • subplot
    • subplot.load_data()
    • subplot.plot_data()
• sens_center_plot module
  • handle_cmd_options()
  • main()
  • sens_center
    • sens_center.clean()
    • sens_center.color_electrodes()
    • sens_center.compute_center_of_mass()
    • sens_center.compute_sens()
    • sens_center.compute_sensitivity_centers()
    • sens_center.get_configs()
    • sens_center.get_sens_centers()
    • sens_center.plot_sens_center()
    • sens_center.plot_sensitivities_to_file()
    • sens_center.plot_single_configuration()
    • sens_center.remove_tmp_dir()
• td_clean module
  • main()
• td_correct_temperature module
  • calc_correction()
  • handle_options()
  • main()
  • read_iter()
  • readin_rho()
  • readin_temp()
  • save_mag_to_file()
• td_init module
  • handle_cmd_options()
  • main()
  • move()
• td_plot module
  • alpha_from_cov()
  • calc_complex()
  • check_minmax()
  • create_anisomagplot()
  • create_anisophaplot()
  • create_fpiplots()
  • create_hlammagplot()
  • create_hlamphaplot()
  • create_non_dcplots()
  • create_singleplots()
  • create_tdplot()
  • getfigsize()
  • handle_options()
  • list_datafiles()
  • load_cov()
  • load_rho()
  • main()
  • plot_cov()
  • plot_imag()
  • plot_mag()
  • plot_pha()
  • plot_ratio()
  • plot_real()
  • read_datafiles()
  • read_iter()
  • td_type()
• td_residuals module
  • main()
  • open_data()
  • open_inv()
  • read_lastmodfile()
  • shiftedColorMap()
• td_run_all_local module
  • _get_mp_settings()
  • _run_crmod_in_tomodir()
  • _run_crtomo_in_tomodir()
  • check_if_needs_inversion()
  • check_if_needs_modeling()
  • find_unfinished_tomodirs()
  • handle_cmd_options()
  • is_tomodir()
  • main()
  • run_CRMod()
  • run_CRTomo()
• td_test module
  • handle_cmd_options()
  • main()
• volt_correct_temperature module
  • calc_correction()
  • handle_options()
  • main()
  • readin_volt()
  • save_volt()
• volt_filter_using_residuals module
  • handle_cmd_args()
  • main()
  • open_data()
  • open_inv()
  • read_lastmodfile()
• volt_histogram module
  • main()