Index

_

__init__() (crtomo.ConfigManager method) (crtomo.configManager.ConfigManager method) (crtomo.crt_grid method) (crtomo.eitMan method) (crtomo.eitManager.eitMan method) (crtomo.grid.crt_grid method) (crtomo.interface.crmod_interface method) (crtomo.nodeManager.NodeMan method) (crtomo.notebook.nb.processing_workflow_v1 method) (crtomo.parManager.ParMan method) (crtomo.plotManager.plotManager method) (crtomo.tdMan method) (crtomo.tdManager.tdMan method) _almost_equal() (in module grid_translate_model) _check_and_convert_bools() (crtomo.cfg.crmod_config method) _check_boundary_type_ordering() (in module cr_trig_create) _check_for_duplicate_boundary_nodes() (in module cr_trig_create) _check_state() (crtomo.tdMan method) (crtomo.tdManager.tdMan method) _clean_pid() (crtomo.parManager.ParMan method) _com_data_trafo_mode() (crtomo.parManager.ParMan method) _crmod_to_abmn() (crtomo.ConfigManager method) (crtomo.configManager.ConfigManager method) _get_area_polygon() (crtomo.crt_grid static method) (crtomo.grid.crt_grid static method) _get_crmod_abmn() (crtomo.ConfigManager method) (crtomo.configManager.ConfigManager method) _get_mp_settings() (in module td_run_all_local) _get_next_index() (crtomo.ConfigManager method) (crtomo.configManager.ConfigManager method) (crtomo.nodeManager.NodeMan method) (crtomo.parManager.ParMan method) _get_tdm() (crtomo.interface.crmod_interface method) _init_frequencies() (crtomo.eitMan method) (crtomo.eitManager.eitMan method) _initialize_components() (crtomo.tdMan method) (crtomo.tdManager.tdMan method) _invert() (crtomo.tdMan method) (crtomo.tdManager.tdMan method) _line (class in cr_trig_parse_gmsh) _load_grid() (in module grid_translate_model) _model() (crtomo.tdMan method) (crtomo.tdManager.tdMan method) _prepare_grids() (crtomo.crt_grid method) (crtomo.grid.crt_grid method)

_read_elem_elements() (crtomo.crt_grid method) (crtomo.grid.crt_grid method) _read_elem_header() (crtomo.crt_grid method) (crtomo.grid.crt_grid method) _read_elem_neighbors() (crtomo.crt_grid method) (crtomo.grid.crt_grid method) _read_elem_nodes() (crtomo.crt_grid method) (crtomo.grid.crt_grid method) _read_eps_ctr() (crtomo.tdMan static method) (crtomo.tdManager.tdMan static method) _read_inv_ctr() (crtomo.tdMan method) (crtomo.tdManager.tdMan method) _read_inversion_fwd_responses() (crtomo.tdMan method) (crtomo.tdManager.tdMan method) _read_inversion_results() (crtomo.tdMan method) (crtomo.tdManager.tdMan method) _read_l1_coverage() (crtomo.tdMan method) (crtomo.tdManager.tdMan method) _read_l2_coverage() (crtomo.tdMan method) (crtomo.tdManager.tdMan method) _read_modeling_results() (crtomo.tdMan method) (crtomo.tdManager.tdMan method) _read_potentials() (crtomo.tdMan method) (crtomo.tdManager.tdMan method) _read_resm_m() (crtomo.tdMan method) (crtomo.tdManager.tdMan method) _read_sensitivities() (crtomo.tdMan method) (crtomo.tdManager.tdMan method) _run_crmod_in_tomodir() (in module td_run_all_local) _run_crtomo_in_tomodir() (in module td_run_all_local) _save_potentials() (crtomo.tdMan method) (crtomo.tdManager.tdMan method) _save_sensitivities() (crtomo.tdMan method) (crtomo.tdManager.tdMan method) _set_help_page() (crtomo.notebook.nb.processing_workflow_v1 method) _write_el_admittance() (crtomo.tdMan method) (crtomo.tdManager.tdMan method) _write_elem_header() (crtomo.crt_grid method) (crtomo.grid.crt_grid method) _write_elements() (crtomo.crt_grid method) (crtomo.grid.crt_grid method) _write_neighbors() (crtomo.crt_grid method) (crtomo.grid.crt_grid method) _write_nodes() (crtomo.crt_grid method) (crtomo.grid.crt_grid method)

A

abmn_to_dataframe() (crtomo.ConfigManager method) (crtomo.configManager.ConfigManager method) add_2d_cos_anomaly_line() (crtomo.parManager.ParMan method) add_boundary() (cr_trig_create.Mesh method) add_checkerboard_pattern() (crtomo.parManager.ParMan method) add_data() (crtomo.nodeManager.NodeMan method) (crtomo.parManager.ParMan method) add_empty_dataset() (crtomo.parManager.ParMan method) add_gaussian_anomaly_to_parset() (crtomo.parManager.ParMan method) add_gaussian_line() (crtomo.parManager.ParMan method) add_grid_data() (crtomo.crt_grid method) (crtomo.grid.crt_grid method) add_homogeneous_model() (crtomo.eitMan method) (crtomo.eitManager.eitMan method) (crtomo.tdMan method) (crtomo.tdManager.tdMan method) add_line() (cr_trig_create.Mesh method) add_measurements() (crtomo.ConfigManager method) (crtomo.configManager.ConfigManager method) add_stabilizer_nodes() (in module cr_trig_create) add_to_configs() (crtomo.ConfigManager method) (crtomo.configManager.ConfigManager method) (crtomo.eitMan method) (crtomo.eitManager.eitMan method)

add_to_decouplings() (crtomo.tdMan method) (crtomo.tdManager.tdMan method) alpha_from_cov() (in module td_plot) analyze_internal_angles() (crtomo.crt_grid method) (crtomo.grid.crt_grid method) apply_crtomo_cfg() (crtomo.eitMan method) (crtomo.eitManager.eitMan method) apply_next_input() (crtomo.notebook.nb.base_step method) (crtomo.notebook.nb.step_data_import method) (crtomo.notebook.nb.step_fe_mesh method) (crtomo.notebook.nb.step_inversion_analysis method) (crtomo.notebook.nb.step_inversion_settings method) (crtomo.notebook.nb.step_raw_visualization method) apply_next_input_from_gui() (crtomo.notebook.nb.step_data_import method) (crtomo.notebook.nb.step_fe_mesh method) (crtomo.notebook.nb.step_inversion_analysis method) (crtomo.notebook.nb.step_inversion_settings method) (crtomo.notebook.nb.step_raw_visualization method) apply_noise_models() (crtomo.eitMan method) (crtomo.eitManager.eitMan method) assign_sip_signatures_using_mask() (crtomo.eitMan method) (crtomo.eitManager.eitMan method)

B

base_step (class in crtomo.notebook.nb)

C

calc_complex() (in module sd_plot) (in module td_plot) calc_correction() (in module td_correct_temperature) (in module volt_correct_temperature) calculate_dimensions() (crtomo.crt_grid method) (crtomo.grid.crt_grid method) callback_step_ran() (crtomo.notebook.nb.processing_workflow_v1 method) can_run() (crtomo.notebook.nb.base_step method) (crtomo.notebook.nb.step_data_import method) (crtomo.notebook.nb.step_fe_mesh method) (crtomo.notebook.nb.step_inversion_analysis method) (crtomo.notebook.nb.step_inversion_settings method) (crtomo.notebook.nb.step_raw_visualization method) center() (crtomo.crt_grid.element method) (crtomo.grid.crt_grid.element method) center_of_mass_value() (crtomo.parManager.ParMan method) center_of_mass_value_multiple() (crtomo.parManager.ParMan method) check_boundaries() (in module cr_trig_create) check_if_needs_inversion() (in module td_run_all_local) check_if_needs_modeling() (in module td_run_all_local) check_measurements_against_sensitivities() (crtomo.tdMan method) (crtomo.tdManager.tdMan method) check_minmax() (in module sd_plot) (in module td_plot) check_options() (in module grid_extralines_gen_decouplings) clean() (sens_center_plot.sens_center method) clear() (crtomo.cfg.crmod_config method) (crtomo.cfg.crtomo_config method) clear_configs() (crtomo.ConfigManager method) (crtomo.configManager.ConfigManager method) clear_measurements() (crtomo.ConfigManager method) (crtomo.configManager.ConfigManager method) (crtomo.tdMan method) (crtomo.tdManager.tdMan method) cm() (sd_plot.overview_plot method) color_electrodes() (sens_center_plot.sens_center method) compute_center_of_mass() (sens_center_plot.sens_center method) compute_K_factors() (in module cr_get_modelling_errors) compute_potentials_analytical_hs() (in module crtomo.analytical_solution) compute_sens() (sens_center_plot.sens_center method) compute_sensitivity_centers() (sens_center_plot.sens_center method) compute_voltages() (in module crtomo.analytical_solution) ConfigManager (class in crtomo) (class in crtomo.configManager) converter_abs_log10() (in module crtomo.plotManager) converter_asinh() (in module crtomo.plotManager) converter_change_sign() (in module crtomo.plotManager) converter_log10_to_lin() (in module crtomo.plotManager) converter_pm_log10() (in module crtomo.plotManager) converter_sensitivity() (in module crtomo.plotManager) copy() (crtomo.cfg.crmod_config method) (crtomo.cfg.crtomo_config method) (crtomo.tdMan method) (crtomo.tdManager.tdMan method) cr_get_analytical_solutions module cr_get_modelling_errors module cr_trig_create module cr_trig_parse_gmsh module create_anisomagplot() (in module td_plot)

create_anisophaplot() (in module td_plot) create_figure() (sd_plot.overview_plot method) create_fpiplots() (in module td_plot) create_hlammagplot() (in module td_plot) create_hlamphaplot() (in module td_plot) create_ipywidget_gui() (crtomo.notebook.nb.base_step method) (crtomo.notebook.nb.step_data_import method) (crtomo.notebook.nb.step_fe_mesh method) (crtomo.notebook.nb.step_inversion_analysis method) (crtomo.notebook.nb.step_inversion_settings method) (crtomo.notebook.nb.step_raw_visualization method) create_non_dcplots() (in module td_plot) create_parset_with_gaussian_anomaly() (crtomo.parManager.ParMan method) create_singleplots() (in module td_plot) create_surface_grid() (crtomo.crt_grid static method) (crtomo.grid.crt_grid static method) create_tdplot() (in module td_plot) create_tomodir() (crtomo.tdMan method) (crtomo.tdManager.tdMan method) crmod_config (class in crtomo.cfg) crmod_interface (class in crtomo.interface) crt_grid (class in crtomo) (class in crtomo.grid) crt_grid.element (class in crtomo) (class in crtomo.grid) crtomo module crtomo.analytical_solution module crtomo.binaries module crtomo.cfg module crtomo.configManager module crtomo.debug module crtomo.eitManager module crtomo.grid module crtomo.interface module crtomo.mpl module crtomo.mpl_setup module crtomo.nodeManager module crtomo.notebook module crtomo.notebook.nb module crtomo.parManager module crtomo.plotManager module crtomo.status module crtomo.tdManager module crtomo_config (class in crtomo.cfg) crtomo_gui_jupyter (class in crtomo.notebook.nb)

D

debug_plot() (in module grid_extralines_gen_decouplings) debug_plot_mesh() (in module cr_trig_parse_gmsh) delete_data_points() (crtomo.ConfigManager method) (crtomo.configManager.ConfigManager method) delete_measurements() (crtomo.ConfigManager method) (crtomo.configManager.ConfigManager method)

determine_path_along_nodes() (crtomo.crt_grid method) (crtomo.grid.crt_grid method) distances() (in module grid_extralines_gen_decouplings) do_we_run_in_ipython() (in module crtomo.notebook.nb)

E

eitMan (class in crtomo) (class in crtomo.eitManager) element_neighbors (crtomo.crt_grid property) (crtomo.grid.crt_grid property) element_neighbors_old (crtomo.crt_grid property) (crtomo.grid.crt_grid property) extract_all_spectra() (crtomo.eitMan method) (crtomo.eitManager.eitMan method) extract_along_line() (crtomo.parManager.ParMan method) (crtomo.tdMan method) (crtomo.tdManager.tdMan method)

extract_points() (crtomo.eitMan method) (crtomo.eitManager.eitMan method) (crtomo.parManager.ParMan method) (crtomo.tdMan method) (crtomo.tdManager.tdMan method) extract_polygon_area() (crtomo.eitMan method) (crtomo.eitManager.eitMan method) (crtomo.parManager.ParMan method)

F

find_nearest_node() (crtomo.crt_grid method) (crtomo.grid.crt_grid method) find_neighbors() (in module grid_gen_depth_decoupling) find_previous_step() (crtomo.notebook.nb.base_step method) (crtomo.notebook.nb.step_data_import method) (crtomo.notebook.nb.step_fe_mesh method) (crtomo.notebook.nb.step_inversion_analysis method) (crtomo.notebook.nb.step_inversion_settings method) (crtomo.notebook.nb.step_raw_visualization method)

find_unfinished_tomodirs() (in module td_run_all_local) forward_complex() (crtomo.interface.crmod_interface method) fromkeys() (crtomo.cfg.crmod_config method) (crtomo.cfg.crtomo_config method) fwd_complex_logY_sigma() (crtomo.interface.crmod_interface method) fwd_complex_R_rho() (crtomo.interface.crmod_interface method) fwd_complex_R_sigma() (crtomo.interface.crmod_interface method)

G

gen_all_current_dipoles() (crtomo.ConfigManager method) (crtomo.configManager.ConfigManager method) gen_all_voltages_for_injections() (crtomo.ConfigManager method) (crtomo.configManager.ConfigManager method) gen_configs_permutate() (crtomo.ConfigManager method) (crtomo.configManager.ConfigManager method) gen_dipole_dipole() (crtomo.ConfigManager method) (crtomo.configManager.ConfigManager method) gen_gradient() (crtomo.ConfigManager method) (crtomo.configManager.ConfigManager method) gen_inner_gradients() (crtomo.ConfigManager method) (crtomo.configManager.ConfigManager method) gen_reciprocals() (crtomo.ConfigManager method) (crtomo.configManager.ConfigManager method) gen_schlumberger() (crtomo.ConfigManager method) (crtomo.configManager.ConfigManager method) gen_voltage_dipoles_skip() (crtomo.ConfigManager method) (crtomo.configManager.ConfigManager method) gen_wenner() (crtomo.ConfigManager method) (crtomo.configManager.ConfigManager method) general_settings() (in module crtomo.mpl) get() (crtomo.cfg.crmod_config method) (crtomo.cfg.crtomo_config method) (in module crtomo.binaries) get_adj_bound_v1() (in module cr_trig_parse_gmsh) get_adj_bound_v2() (in module cr_trig_parse_gmsh) get_center() (cr_trig_parse_gmsh._line method) get_configs() (sens_center_plot.sens_center method) get_decouplings_for_line() (in module grid_extralines_gen_decouplings) get_diff() (cr_trig_parse_gmsh._line method) get_distance() (cr_trig_parse_gmsh._line method) get_distance_matrix() (crtomo.crt_grid method) (crtomo.grid.crt_grid method) get_electrode_node() (crtomo.crt_grid method) (crtomo.grid.crt_grid method) get_electrode_positions() (crtomo.crt_grid method) (crtomo.grid.crt_grid method) get_element_areas() (crtomo.crt_grid method) (crtomo.grid.crt_grid method) get_element_centroids() (crtomo.crt_grid method) (crtomo.grid.crt_grid method) get_element_indices_along_line() (crtomo.crt_grid method) (crtomo.grid.crt_grid method) get_element_indices_within_rectangle() (crtomo.crt_grid method) (crtomo.grid.crt_grid method) get_elements() (in module cr_trig_parse_gmsh) get_func_decoupling_at_z() (in module grid_gen_depth_decoupling) get_fwd_reda_container() (crtomo.tdMan method) (crtomo.tdManager.tdMan method) get_grid() (in module crtomo.debug) get_header() (in module cr_trig_parse_gmsh)

get_internal_angles() (crtomo.crt_grid method) (crtomo.grid.crt_grid method) get_linear_fit() (in module grid_gen_depth_decoupling) get_measurement_responses() (crtomo.eitMan method) (crtomo.eitManager.eitMan method) get_min_max_electrode_distances() (crtomo.crt_grid method) (crtomo.grid.crt_grid method) get_minmax() (crtomo.crt_grid method) (crtomo.grid.crt_grid method) get_mpl_version() (in module crtomo.mpl) get_node_tree() (crtomo.crt_grid method) (crtomo.grid.crt_grid method) get_nodes() (in module cr_trig_parse_gmsh) get_point_id() (cr_trig_create.Mesh method) get_polygon_from_file() (crtomo.crt_grid method) (crtomo.grid.crt_grid method) get_potential() (crtomo.tdMan method) (crtomo.tdManager.tdMan method) get_R_mod() (in module cr_get_modelling_errors) get_sens_centers() (sens_center_plot.sens_center method) get_sensitivity() (crtomo.tdMan method) (crtomo.tdManager.tdMan method) get_unique_current_injections() (crtomo.ConfigManager method) (crtomo.configManager.ConfigManager method) get_univariate_spline() (in module grid_gen_depth_decoupling) getfigsize() (in module td_plot) (sd_plot.overview_plot method) grid_container (class in grid_homogenize) grid_convert_boundary_to_svg module grid_extralines_gen_decouplings module grid_gen_decouplings module grid_gen_depth_decoupling module grid_gen_surface_files module grid_homogenize module grid_parse_svg_to_files module grid_plot_elem_angles module grid_plot_wireframe module grid_rotate module grid_translate module grid_translate_model module

H

handle_cmd_args() (in module grid_parse_svg_to_files) (in module volt_filter_using_residuals) handle_cmd_options() (in module cr_get_analytical_solutions) (in module cr_get_modelling_errors) (in module cr_trig_create) (in module grid_gen_depth_decoupling) (in module grid_gen_surface_files) (in module grid_homogenize) (in module grid_plot_wireframe) (in module grid_rotate) (in module grid_translate) (in module grid_translate_model) (in module sens_center_plot) (in module td_init) (in module td_run_all_local) (in module td_test)

handle_cmd_options_v2() (in module grid_extralines_gen_decouplings) handle_options() (in module sd_plot) (in module td_correct_temperature) (in module td_plot) (in module volt_correct_temperature) help() (crtomo.cfg.crtomo_config method) homogenize_grid() (in module grid_homogenize)

I

import_from_file() (crtomo.cfg.crtomo_config method) interpolate_grid() (crtomo.crt_grid static method) (crtomo.grid.crt_grid static method) inv_get_last_pid() (crtomo.tdMan method) (crtomo.tdManager.tdMan method) inv_last_cim_parset() (crtomo.tdMan method) (crtomo.tdManager.tdMan method) inv_last_cre_parset() (crtomo.tdMan method) (crtomo.tdManager.tdMan method) inv_last_rmag_parset() (crtomo.tdMan method) (crtomo.tdManager.tdMan method)

inv_last_rpha_parset() (crtomo.tdMan method) (crtomo.tdManager.tdMan method) invert() (crtomo.tdMan method) (crtomo.tdManager.tdMan method) invert_with_crhydra() (crtomo.tdMan method) (crtomo.tdManager.tdMan method) is_in() (cr_trig_create.Mesh method) is_sipdir() (in module crtomo.status) is_tomodir() (in module crtomo.status) (in module td_run_all_local) items() (crtomo.cfg.crmod_config method) (crtomo.cfg.crtomo_config method)

J

J() (crtomo.interface.crmod_interface method) J_complex_logY_sigma() (crtomo.interface.crmod_interface method)

J_complex_R_sigma() (crtomo.interface.crmod_interface method) J_complex_Y_sigma() (crtomo.interface.crmod_interface method)

K

keys() (crtomo.cfg.crmod_config method) (crtomo.cfg.crtomo_config method)

L

length_line() (crtomo.crt_grid.element method) (crtomo.grid.crt_grid.element method) line_line_intersect() (in module grid_extralines_gen_decouplings) list_datafiles() (in module td_plot) load_configs() (crtomo.ConfigManager method) (crtomo.configManager.ConfigManager method) (in module cr_get_analytical_solutions) load_cov() (in module td_plot) load_crmod_config() (crtomo.ConfigManager method) (crtomo.configManager.ConfigManager method) load_crmod_data() (crtomo.ConfigManager method) (crtomo.configManager.ConfigManager method) load_crmod_or_4c_configs() (crtomo.ConfigManager method) (crtomo.configManager.ConfigManager method) load_crmod_volt() (crtomo.ConfigManager method) (crtomo.configManager.ConfigManager method) load_data() (sd_plot.subplot method) load_data_crt_files() (crtomo.eitMan method) (crtomo.eitManager.eitMan method) load_decfile() (in module grid_gen_depth_decoupling)

load_elec_file() (crtomo.crt_grid method) (crtomo.grid.crt_grid method) load_elem_file() (crtomo.crt_grid method) (crtomo.grid.crt_grid method) load_from_rho_file() (crtomo.parManager.ParMan method) load_from_sens_file() (crtomo.parManager.ParMan method) load_grid() (crtomo.crt_grid method) (crtomo.grid.crt_grid method) (in module cr_get_analytical_solutions) (sd_plot.overview_plot method) load_injections_from_mcf() (crtomo.ConfigManager method) (crtomo.configManager.ConfigManager method) load_inv_result() (crtomo.parManager.ParMan method) load_inversion_results() (crtomo.eitMan method) (crtomo.eitManager.eitMan method) load_model_from_file() (crtomo.parManager.ParMan method) load_parset_from_file() (crtomo.tdMan method) (crtomo.tdManager.tdMan method) load_rho() (in module td_plot) load_rho_file() (crtomo.tdMan method) (crtomo.tdManager.tdMan method)

M

main() (in module cr_get_analytical_solutions) (in module cr_get_modelling_errors) (in module cr_trig_create) (in module cr_trig_parse_gmsh) (in module grid_convert_boundary_to_svg) (in module grid_extralines_gen_decouplings) (in module grid_gen_decouplings) (in module grid_gen_depth_decoupling) (in module grid_gen_surface_files) (in module grid_homogenize) (in module grid_parse_svg_to_files) (in module grid_plot_elem_angles) (in module grid_plot_wireframe) (in module grid_rotate) (in module grid_translate) (in module grid_translate_model) (in module sd_plot) (in module sens_center_plot) (in module td_clean) (in module td_correct_temperature) (in module td_init) (in module td_plot) (in module td_residuals) (in module td_run_all_local) (in module td_test) (in module volt_correct_temperature) (in module volt_filter_using_residuals) (in module volt_histogram) measurements() (crtomo.eitMan method) (crtomo.eitManager.eitMan method) (crtomo.tdMan method) (crtomo.tdManager.tdMan method) Mesh (class in cr_trig_create) model() (crtomo.eitMan method) (crtomo.eitManager.eitMan method) (crtomo.tdMan method) (crtomo.tdManager.tdMan method) modify_area() (crtomo.parManager.ParMan method) modify_pixels() (crtomo.parManager.ParMan method) modify_polygon() (crtomo.parManager.ParMan method) modify_polygon_old() (crtomo.parManager.ParMan method) module cr_get_analytical_solutions cr_get_modelling_errors cr_trig_create cr_trig_parse_gmsh crtomo crtomo.analytical_solution crtomo.binaries crtomo.cfg crtomo.configManager crtomo.debug crtomo.eitManager crtomo.grid crtomo.interface crtomo.mpl crtomo.mpl_setup crtomo.nodeManager crtomo.notebook crtomo.notebook.nb crtomo.parManager crtomo.plotManager crtomo.status crtomo.tdManager grid_convert_boundary_to_svg grid_extralines_gen_decouplings grid_gen_decouplings grid_gen_depth_decoupling grid_gen_surface_files grid_homogenize grid_parse_svg_to_files grid_plot_elem_angles grid_plot_wireframe grid_rotate grid_translate grid_translate_model sd_plot sens_center_plot td_clean td_correct_temperature td_init td_plot td_residuals td_run_all_local td_test volt_correct_temperature volt_filter_using_residuals volt_histogram

move() (in module td_init) mpl_get_cb_bound_below_plot() (in module crtomo.mpl) (in module crtomo.mpl_setup) mpl_get_cb_bound_next_to_plot() (in module crtomo.mpl) (in module crtomo.mpl_setup)

N

NodeMan (class in crtomo.nodeManager) noise_model (class in crtomo) (class in crtomo.tdManager)

nr_of_configs (crtomo.ConfigManager property) (crtomo.configManager.ConfigManager property)

O

open_data() (in module td_residuals) (in module volt_filter_using_residuals) open_inv() (in module td_residuals) (in module volt_filter_using_residuals)

outer_normal_line() (crtomo.crt_grid.element method) (crtomo.grid.crt_grid.element method) overview_plot (class in sd_plot)

P

ParMan (class in crtomo.parManager) parse_gmsh() (in module cr_trig_parse_gmsh) parse_svg_path() (in module grid_parse_svg_to_files) persistency_load() (crtomo.notebook.nb.base_step method) (crtomo.notebook.nb.step_data_import method) (crtomo.notebook.nb.step_fe_mesh method) (crtomo.notebook.nb.step_inversion_analysis method) (crtomo.notebook.nb.step_inversion_settings method) (crtomo.notebook.nb.step_raw_visualization method) persistency_store() (crtomo.notebook.nb.base_step method) (crtomo.notebook.nb.step_data_import method) (crtomo.notebook.nb.step_fe_mesh method) (crtomo.notebook.nb.step_inversion_analysis method) (crtomo.notebook.nb.step_inversion_settings method) (crtomo.notebook.nb.step_raw_visualization method) plot_all_result_spectra() (crtomo.eitMan method) (crtomo.eitManager.eitMan method) plot_and_save_deviations() (in module cr_get_modelling_errors) plot_cmplx() (in module sd_plot) plot_cov() (in module td_plot) plot_coverage() (crtomo.tdMan method) (crtomo.tdManager.tdMan method) plot_data() (sd_plot.subplot method) plot_dc() (in module sd_plot) plot_decouplings_to_ax() (crtomo.tdMan method) (crtomo.tdManager.tdMan method) plot_elements_to_ax() (crtomo.plotManager.plotManager method) plot_eps_data() (crtomo.tdMan method) (crtomo.tdManager.tdMan method) plot_eps_data_hist() (crtomo.tdMan method) (crtomo.tdManager.tdMan method) plot_error_pars() (crtomo.ConfigManager method) (crtomo.configManager.ConfigManager method) plot_forward_models() (crtomo.eitMan method) (crtomo.eitManager.eitMan method) (crtomo.tdMan method) (crtomo.tdManager.tdMan method) plot_grid() (crtomo.crt_grid method) (crtomo.grid.crt_grid method)

plot_grid_to_ax() (crtomo.crt_grid method) (crtomo.grid.crt_grid method) plot_imag() (in module td_plot) plot_inversion_evolution() (crtomo.tdMan method) (crtomo.tdManager.tdMan method) plot_inversion_misfit_pseudosection() (crtomo.tdMan method) (crtomo.tdManager.tdMan method) plot_inversion_result_rmag() (crtomo.tdMan method) (crtomo.tdManager.tdMan method) plot_mag() (in module td_plot) plot_nodes_contour_to_ax() (crtomo.plotManager.plotManager method) plot_nodes_current_streamlines_to_ax() (crtomo.plotManager.plotManager method) plot_nodes_pcolor_to_ax() (crtomo.plotManager.plotManager method) plot_pha() (in module td_plot) plot_pseudo_locs() (crtomo.tdMan method) (crtomo.tdManager.tdMan method) plot_ratio() (in module td_plot) plot_real() (in module td_plot) plot_result_spectrum() (crtomo.eitMan method) (crtomo.eitManager.eitMan method) plot_sens_center() (sens_center_plot.sens_center method) plot_sensitivities_to_file() (sens_center_plot.sens_center method) plot_sensitivity() (crtomo.tdMan method) (crtomo.tdManager.tdMan method) plot_single_configuration() (sens_center_plot.sens_center method) plot_wireframe() (in module grid_plot_wireframe) plotManager (class in crtomo.plotManager) pltMan (in module crtomo) pop() (crtomo.cfg.crmod_config method) (crtomo.cfg.crtomo_config method) popitem() (crtomo.cfg.crmod_config method) (crtomo.cfg.crtomo_config method) pot_ana() (in module crtomo.analytical_solution) prepare_inv() (crtomo.notebook.nb.crtomo_gui_jupyter method) prepare_jupyter_gui() (crtomo.notebook.nb.processing_workflow_v1 method) prepare_widgets() (crtomo.notebook.nb.crtomo_gui_jupyter method) print_step_tree() (crtomo.notebook.nb.processing_workflow_v1 method) processing_workflow_v1 (class in crtomo.notebook.nb)

R

read_char_lengths() (cr_trig_create.Mesh method) read_datafiles() (in module td_plot) read_decouplings_file() (crtomo.tdMan method) (crtomo.tdManager.tdMan method) read_electrodes() (cr_trig_create.Mesh method) read_extra_lines() (cr_trig_create.Mesh method) read_extra_nodes() (cr_trig_create.Mesh method) read_inversion_results() (crtomo.tdMan method) (crtomo.tdManager.tdMan method) read_iter() (in module td_correct_temperature) (in module td_plot) read_lastmodfile() (in module td_residuals) (in module volt_filter_using_residuals) read_voltages() (crtomo.tdMan method) (crtomo.tdManager.tdMan method) readin_rho() (in module td_correct_temperature) readin_temp() (in module td_correct_temperature) readin_volt() (in module volt_correct_temperature) register_data_errors() (crtomo.tdMan method) (crtomo.tdManager.tdMan method) register_forward_model() (crtomo.eitMan method) (crtomo.eitManager.eitMan method) (crtomo.tdMan method) (crtomo.tdManager.tdMan method) register_magnitude_model() (crtomo.tdMan method) (crtomo.tdManager.tdMan method)

register_measurements() (crtomo.tdMan method) (crtomo.tdManager.tdMan method) register_phase_model() (crtomo.tdMan method) (crtomo.tdManager.tdMan method) remove_duplicates() (crtomo.ConfigManager method) (crtomo.configManager.ConfigManager method) remove_max_dipole_sep() (crtomo.ConfigManager method) (crtomo.configManager.ConfigManager method) remove_reciprocals() (crtomo.ConfigManager method) (crtomo.configManager.ConfigManager method) remove_tmp_dir() (sens_center_plot.sens_center method) remove_using_nr_injections() (crtomo.ConfigManager method) (crtomo.configManager.ConfigManager method) reset() (crtomo.parManager.ParMan method) reset_data() (crtomo.tdMan method) (crtomo.tdManager.tdMan method) reset_tds() (crtomo.eitMan method) (crtomo.eitManager.eitMan method) reverse_node_order() (crtomo.crt_grid method) (crtomo.grid.crt_grid method) rotate_nodes() (in module grid_rotate) rotate_point() (in module grid_homogenize) rotmat() (in module grid_rotate) run_CRMod() (in module td_run_all_local) run_CRTomo() (in module td_run_all_local) run_inv() (crtomo.notebook.nb.crtomo_gui_jupyter method)

S

save() (sd_plot.overview_plot method) save_decouplins_file() (crtomo.tdMan method) (crtomo.tdManager.tdMan method) save_elec_file() (crtomo.crt_grid method) (crtomo.grid.crt_grid method) save_elem_file() (crtomo.crt_grid method) (crtomo.grid.crt_grid method) save_mag_to_file() (in module td_correct_temperature) save_measurements() (crtomo.tdMan method) (crtomo.tdManager.tdMan method) save_measurements_to_directory() (crtomo.eitMan method) (crtomo.eitManager.eitMan method) save_potentials() (in module cr_get_analytical_solutions) save_to_dir() (grid_homogenize.grid_container method) save_to_eitdir() (crtomo.eitMan method) (crtomo.eitManager.eitMan method) save_to_rho_file() (crtomo.parManager.ParMan method) save_to_tarfile() (crtomo.tdMan method) (crtomo.tdManager.tdMan method) save_to_tomodir() (crtomo.tdMan method) (crtomo.tdManager.tdMan method) save_volt() (in module volt_correct_temperature) save_voltages() (in module cr_get_analytical_solutions) sd_plot module seitdir_is_finished() (in module crtomo) (in module crtomo.status) sens_center (class in sens_center_plot) sens_center_plot module sensitivity_center_of_masses() (crtomo.tdMan method) (crtomo.tdManager.tdMan method) set_area_to_single_colecole() (crtomo.eitMan method) (crtomo.eitManager.eitMan method)

set_area_to_sip_signature() (crtomo.eitMan method) (crtomo.eitManager.eitMan method) set_defaults() (crtomo.cfg.crmod_config method) (crtomo.cfg.crtomo_config method) set_electrode_capacitances() (crtomo.eitMan method) (crtomo.eitManager.eitMan method) set_input_new() (crtomo.notebook.nb.base_step method) (crtomo.notebook.nb.step_data_import method) (crtomo.notebook.nb.step_fe_mesh method) (crtomo.notebook.nb.step_inversion_analysis method) (crtomo.notebook.nb.step_inversion_settings method) (crtomo.notebook.nb.step_raw_visualization method) set_mswitch() (crtomo.cfg.crtomo_config method) set_prior_model() (crtomo.tdMan method) (crtomo.tdManager.tdMan method) set_starting_model() (crtomo.tdMan method) (crtomo.tdManager.tdMan method) setdefault() (crtomo.cfg.crmod_config method) (crtomo.cfg.crtomo_config method) setup() (in module crtomo.mpl) shiftedColorMap() (in module td_residuals) show() (crtomo.notebook.nb.crtomo_gui_jupyter method) show_gui() (crtomo.notebook.nb.processing_workflow_v1 method) show_parset() (crtomo.tdMan method) (crtomo.tdManager.tdMan method) sipdir_is_finished() (in module crtomo.status) split_into_normal_and_reciprocal() (crtomo.ConfigManager method) (crtomo.configManager.ConfigManager method) step_data_import (class in crtomo.notebook.nb) step_fe_mesh (class in crtomo.notebook.nb) step_inversion_analysis (class in crtomo.notebook.nb) step_inversion_settings (class in crtomo.notebook.nb) step_raw_visualization (class in crtomo.notebook.nb) subplot (class in sd_plot)

T

td_clean module td_correct_temperature module td_init module td_is_finished() (in module crtomo) (in module crtomo.status) td_plot module td_residuals module td_run_all_local module td_test module

td_type() (in module td_plot) tdMan (class in crtomo) (class in crtomo.tdManager) test_plot() (crtomo.crt_grid method) (crtomo.grid.crt_grid method) to_iris_syscal() (crtomo.ConfigManager method) (crtomo.configManager.ConfigManager method) to_pg_scheme() (crtomo.ConfigManager method) (crtomo.configManager.ConfigManager method) transfer_input_new_to_applied() (crtomo.notebook.nb.base_step method) (crtomo.notebook.nb.step_data_import method) (crtomo.notebook.nb.step_fe_mesh method) (crtomo.notebook.nb.step_inversion_analysis method) (crtomo.notebook.nb.step_inversion_settings method) (crtomo.notebook.nb.step_raw_visualization method) translate_nodes() (in module grid_translate)

U

unique_injections (crtomo.ConfigManager property) (crtomo.configManager.ConfigManager property)

update() (crtomo.cfg.crmod_config method) (crtomo.cfg.crtomo_config method) update_help_page() (crtomo.notebook.nb.processing_workflow_v1 method)

V

values() (crtomo.cfg.crmod_config method) (crtomo.cfg.crtomo_config method) vector_line() (crtomo.crt_grid.element method) (crtomo.grid.crt_grid.element method) vector_norm_line() (crtomo.crt_grid.element method) (crtomo.grid.crt_grid.element method)

volt_correct_temperature module volt_filter_using_residuals module volt_histogram module

W

Wm() (crtomo.crt_grid method) (crtomo.grid.crt_grid method) Wm_mgs() (crtomo.crt_grid method) (crtomo.grid.crt_grid method) write_boundaries() (cr_trig_create.Mesh method) write_configs() (crtomo.ConfigManager method) (crtomo.configManager.ConfigManager method) write_crmod_config() (crtomo.ConfigManager method) (crtomo.configManager.ConfigManager method) write_crmod_volt() (crtomo.ConfigManager method) (crtomo.configManager.ConfigManager method) write_crmod_volt_with_individual_errors() (crtomo.ConfigManager method) (crtomo.configManager.ConfigManager method)

write_crt_noisemod() (crtomo.noise_model method) (crtomo.tdManager.noise_model method) write_elec_file() (in module cr_trig_parse_gmsh) write_electrodes() (cr_trig_create.Mesh method) write_extra_nodes() (cr_trig_create.Mesh method) write_geo_file() (cr_trig_create.Mesh method) write_in_plane_nodes() (cr_trig_create.Mesh method) write_lines() (cr_trig_create.Mesh method) write_points() (cr_trig_create.Mesh method) write_to_file() (crtomo.cfg.crmod_config method) (crtomo.cfg.crtomo_config method)